Course Modules

General Matlab Textbooks

General Matlab Textbooks General Matlab Textbooks

External Url

Matlab for neuroscientists: An Introduction to Scientific Computing in Matlab. Matlab for neuroscientists: An Introduction to Scientific Computing in Matlab. 0

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External Url

Introduction to Pattern Recognition: A Matlab Approach. Introduction to Pattern Recognition: A Matlab Approach. 1

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Fundamentals of Digital Image Processing : A Practical Approach with Examples in Matlab. Fundamentals of Digital Image Processing : A Practical Approach with Examples in Matlab. 2

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Important Things To Know

Important Things To Know Important Things To Know

External Url

Troubleshooting VNC Login Issues Troubleshooting VNC Login Issues 1

external_url 10381801 0

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External Url

Connect to CCV using VNC (and use GPU compiled MatConvNet) Connect to CCV using VNC (and use GPU compiled MatConvNet) 2

external_url 10381802 0

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External Url

Bash Cheat Sheet & CCV VNC Client/SSH Connection to CCV Clarification Bash Cheat Sheet & CCV VNC Client/SSH Connection to CCV Clarification 3

external_url 10381803 0

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External Url

Tester Tutorial Website Info Tester Tutorial Website Info 4

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Module 1: Foundations

Module 1: Foundations Module 1: Foundations

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Learning outcomes 1 Learning outcomes 1 0

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Context Module Sub Header

Tutorials and Assignments 1

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Assignment

Assignment 1 Assignment 1 20 2

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External Url

Tutorial 1 Tutorial 1 3

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Attachment

Tutorial_1.zip Tutorial_1.zip 4

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External Url

Tutorial 2 Tutorial 2 5

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Tutorial_2.zip Tutorial_2.zip 6

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Context Module Sub Header

Module 1 Week 0 7

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Lecture 1 Lecture 1 8

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External Url

Matlab for neuroscientists: An Introduction to Scientific Computing in Matlab. Chap 5.3. Exercises. Matlab for neuroscientists: An Introduction to Scientific Computing in Matlab. Chap 5.3. Exercises. 9

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External Url

Visual Perception: Key Readings in Cognition. Chap 1. Visual perception: An overview. Visual Perception: Key Readings in Cognition. Chap 1. Visual perception: An overview. 10

external_url 10377108 0

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Context Module Sub Header

Module 1 Week 1 11

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Lecture 2 Lecture 2 12

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Lecture 3 Lecture 3 13

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External Url

Fundamentals of Digital Image Processing. Chap 1. Representation. Fundamentals of Digital Image Processing. Chap 1. Representation. 14

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External Url

Eye and the Brain: The psychology of seeing. Chap 2. Light. Eye and the Brain: The psychology of seeing. Chap 2. Light. 15

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External Url

Eye and the Brain: The psychology of seeing. Chap 3. Eye. Eye and the Brain: The psychology of seeing. Chap 3. Eye. 16

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External Url

Eye Brain and Vision. Chap 2. Impulses, synapses and circuits. Eye Brain and Vision. Chap 2. Impulses, synapses and circuits. 17

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External Url

Computer Vision. Chap 7. Linear filters. Computer Vision. Chap 7. Linear filters. 18

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Context Module Sub Header

Module 1 Week 2 19

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External Tool

Lecture 4 Lecture 4 20

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Lecture 5 Lecture 5 21

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External Url

Theoretical Neuroscience. Chap 2. Neural Encoding II: Reverse correlation and visual receptive fields. Theoretical Neuroscience. Chap 2. Neural Encoding II: Reverse correlation and visual receptive fields. 22

external_url 10377088 0

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External Url

Vision and the Brain: How we perceive the world. Chap 3. Neuronal machinery of vision. Vision and the Brain: How we perceive the world. Chap 3. Neuronal machinery of vision. 23

external_url 10374813 0

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External Url

Vision Science: Photons to phenomenology. Chap 4. Processing image structure. Vision Science: Photons to phenomenology. Chap 4. Processing image structure. 24

external_url 10374888 0

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Attachment

Principals of Neural Science. Chap 26. Visual processing by the retina. Principals of Neural Science. Chap 26. Visual processing by the retina. 25

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External Url

Vision. Chap 2. Representing the image. (Look only at section 2.2) Vision. Chap 2. Representing the image. (Look only at section 2.2) 27

external_url 10378817 0

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Attachment

Vision. Chap 1. The philosophy and the approach. Vision. Chap 1. The philosophy and the approach. 28

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Module 2: Elementary V1 computations

Module 2: Elementary V1 computations Module 2: Elementary V1 computations

Page

Lecture outcomes 2 Lecture outcomes 2 0

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Context Module Sub Header

Assignments and Tutorials 1

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Assignment

Assignment 2 Assignment 2 20 2

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External Url

Tutorial 3 Tutorial 3 3

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Attachment

Tutorial_3.zip Tutorial_3.zip 4

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External Url

Tutorial 4 Tutorial 4 5

external_url 10379608 0

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Context Module Sub Header

Module 2 Week 1 6

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Lecture 6 Lecture 6 7

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Lecture 7 Lecture 7 8

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Attachment

Principles of Neural Science. Chap 27. Central visual pathways. Principles of Neural Science. Chap 27. Central visual pathways. 9

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External Url

The Visual Neurosciences. Chap 44. A modern view of the classical receptive field. The Visual Neurosciences. Chap 44. A modern view of the classical receptive field. 10

external_url 10374885 0

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Context Module Sub Header

Module 2 Week 2 11

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Lecture 8 Lecture 8 12

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Lecture 9 Lecture 9 13

context_external_tool 10380673 0

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External Url

The Visual Neurosciences. Chap 45. Beyond the classical receptive field. The Visual Neurosciences. Chap 45. Beyond the classical receptive field. 14

external_url 10379134 0

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External Url

The Visual Neurosciences. Chap 70. Contour integration and the lateral connections of V1 neurons. The Visual Neurosciences. Chap 70. Contour integration and the lateral connections of V1 neurons. 15

external_url 10379137 0

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Module 3: Higher-level vision

Module 3: Higher-level vision Module 3: Higher-level vision

Page

Learning outcomes 3 Learning outcomes 3 0

wiki_page 10380671 0

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Context Module Sub Header

Assignments and Tutorials 1

context_module_sub_header 10380664 0

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Assignment

Assignment 3 Assignment 3 20 2

assignment 10380663 1

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External Url

Link to Tutorial 5 static version Link to Tutorial 5 static version 3

external_url 10381667 0

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External Url

Link to Tutorial 5 on CCV Link to Tutorial 5 on CCV 4

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Module 3 Week 1 5

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External Url

The Visual Neurosciences. Chap 111. How the visual cortex recognizes objects. The Visual Neurosciences. Chap 111. How the visual cortex recognizes objects. 6

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External Tool

Lecture 10 Lecture 10 7

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Lecture 11 Lecture 11 8

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Context Module Sub Header

Module 3 Week 2 9

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Lecture 12 Lecture 12 10

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Lecture 13 Lecture 13 11

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Module 4: Other visual cues

Module 4: Other visual cues Module 4: Other visual cues

Page

Learning outcomes 4 Learning outcomes 4 0

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Assignments and Tutorials 1

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Assignment

Assignment 4 Assignment 4 20 2

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External Url

Link to Tutorial 6 static version Link to Tutorial 6 static version 3

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External Url

Link to Tutorial 6 CCV (like before) Link to Tutorial 6 CCV (like before) 4

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External Url

Link to Tutorial 6 on new website Link to Tutorial 6 on new website 5

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Tutorial_6.zip Tutorial_6.zip 6

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Module 4 Week 1 7

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External Tool

Lecture 14 Lecture 14 8

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External Tool

Lecture 15 Lecture 15 9

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Attachment

Towards a theory of computation in the visual cortex. Mely & Serre. Towards a theory of computation in the visual cortex. Mely & Serre. 10

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External Url

The Visual Neurosciences. Chap 48. Binocular interaction in the visual cortex. The Visual Neurosciences. Chap 48. Binocular interaction in the visual cortex. 11

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Attachment

Principles of Neural Science. Chap 28. Perception of motion, depth and form. Principles of Neural Science. Chap 28. Perception of motion, depth and form. 12

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Context Module Sub Header

Module 4 Week 2 13

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External Tool

Lecture 16 Lecture 16 14

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External Tool

Lecture 17 Lecture 17 15

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External Url

The Visual Neurosciences. Chap 65. Neural coding of color. The Visual Neurosciences. Chap 65. Neural coding of color. 16

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Attachment

Adelson & Bergen 1991. The Plenoptic Function and the Elements of Early Vision. Adelson & Bergen 1991. The Plenoptic Function and the Elements of Early Vision. 17

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CCV tutorial

CCV tutorial CCV tutorial

Context Module Sub Header

Matlab bash scripts for the workshop are on Oscar in ~/batch_scripts/matlab-workshop 0

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Attachment

Class_CLPS_intro_oscar.pdf Class_CLPS_intro_oscar.pdf 1

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Attachment

MATLAB-workshop-CCV-2016.pdf MATLAB-workshop-CCV-2016.pdf 2

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Levels of analysis

Levels of analysis Levels of analysis

External Tool

Lecture 18 Lecture 18 0

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External Url

Could a neuroscientist understand a microprocessor. Jonas & Kording (2016) Could a neuroscientist understand a microprocessor. Jonas & Kording (2016) 1

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Attachment

Vision. Marr (1982). Read section 1.2 Vision. Marr (1982). Read section 1.2 2

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Exam

Exam Exam

Page

Study questions (subject to updates) Study questions (subject to updates) 1

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Attachment

CLPS1520 Midterm Review Slides.pdf CLPS1520 Midterm Review Slides.pdf 2

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Attachment

CLPS1520 Midterm Review Slides.pptx CLPS1520 Midterm Review Slides.pptx 3

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Final project

Final project Final project

Context Module Sub Header

Brown login required. Please make sure to copy the sample presentation -- do not edit directly 0

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External Url

Final project presentations Final project presentations 1

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